Variant report

Variant	rs6590793
Chromosome Location	chr11:100424060-100424061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501965	0.85[ASN][1000 genomes]
rs10894982	0.85[ASN][1000 genomes]
rs11224279	0.85[ASN][1000 genomes]
rs11224282	0.83[ASN][1000 genomes]
rs12280410	0.93[AFR][1000 genomes]
rs1939308	0.99[ASN][1000 genomes]
rs1939309	0.99[ASN][1000 genomes]
rs35165060	0.85[ASN][1000 genomes]
rs66518530	0.83[ASN][1000 genomes]
rs67786711	0.81[ASN][1000 genomes]
rs72645410	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv556122	chr11:99893282-100585889	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100420400-100428200	Enhancers	Brain Germinal Matrix	brain
2	chr11:100421400-100424200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:100422200-100426000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:100422400-100426800	Weak transcription	Fetal Heart	heart
5	chr11:100422400-100431400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:100422800-100426400	Weak transcription	Fetal Brain Female	brain
7	chr11:100422800-100428800	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:100423600-100425800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:100423600-100426000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:100423600-100426600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:100423600-100426800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:100423600-100431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:100423800-100426000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:100423800-100426000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:100423800-100426600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:100424000-100425800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:100424000-100425800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:100424000-100426400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:100424000-100427400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:100424000-100427600	Weak transcription	Fetal Intestine Small	intestine

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