Variant report

Variant	rs6592272
Chromosome Location	chr11:85865191-85865192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85860013..85862994-chr11:85864825..85867094,3	MCF-7	breast:
2	chr11:85864981..85867412-chr11:85905656..85909447,3	K562	blood:
3	chr11:85864815..85867737-chr11:85873102..85874804,3	MCF-7	breast:
4	chr11:85779554..85782905-chr11:85860304..85865248,6	K562	blood:

Variant related genes	Relation type
ENSG00000254502	Chromatin interaction
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12786057	0.85[ASW][hapmap]
rs1941375	0.92[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs490507	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs583463	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs588992	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs615887	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs621942	0.91[CHB][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap]
rs622110	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs636848	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs664596	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs669336	0.81[JPT][hapmap]
rs7117280	0.85[ASN][1000 genomes]
rs7926460	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85861400-85865200	Enhancers	Liver	Liver
2	chr11:85861800-85865200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:85862000-85865200	Enhancers	Fetal Intestine Small	intestine
4	chr11:85862400-85865200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:85862600-85867400	Weak transcription	Pancreas	Pancrea
6	chr11:85863000-85867600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:85863400-85866400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:85863400-85867400	Weak transcription	Spleen	Spleen
9	chr11:85863400-85870400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:85863400-85870600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:85863400-85873000	Weak transcription	Lung	lung
13	chr11:85863600-85866600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:85863600-85867000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:85863600-85867000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:85863600-85867400	Weak transcription	Left Ventricle	heart
17	chr11:85863600-85867400	Weak transcription	Right Atrium	heart
18	chr11:85863600-85867400	Weak transcription	Right Ventricle	heart
19	chr11:85863600-85869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:85863600-85869600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:85863800-85865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:85863800-85865400	Weak transcription	Fetal Thymus	thymus
24	chr11:85863800-85866400	Weak transcription	Ovary	ovary
25	chr11:85863800-85867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:85863800-85867400	Weak transcription	Placenta	Placenta
27	chr11:85863800-85867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:85864000-85867200	Weak transcription	Adipose Nuclei	Adipose
30	chr11:85864000-85867400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:85864000-85868800	Weak transcription	Hela-S3	cervix
32	chr11:85864200-85865800	Weak transcription	NHEK	skin
33	chr11:85864200-85866200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:85864200-85866400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:85864200-85867200	Weak transcription	Fetal Stomach	stomach
36	chr11:85864200-85867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:85864200-85870400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:85864200-85870800	Weak transcription	HSMM	muscle
39	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:85864400-85865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:85864400-85866000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:85864400-85866000	Weak transcription	HMEC	breast
46	chr11:85864400-85867400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:85864400-85867400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
49	chr11:85864600-85870200	Weak transcription	Brain Substantia Nigra	brain
50	chr11:85864600-85870600	Weak transcription	Fetal Lung	lung

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