Variant report

Variant	rs6592491
Chromosome Location	chr11:72542532-72542533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72540587..72543500-chr11:72581517..72583826,2	K562	blood:
2	chr11:72542208..72542723-chr11:72953527..72954347,2	MCF-7	breast:
3	chr11:72541817..72543134-chr11:72948051..72948598,4	K562	blood:
4	chr11:72395332..72396214-chr11:72542175..72543161,2	K562	blood:
5	chr11:72541772..72543922-chr11:72851050..72853149,2	K562	blood:
6	chr11:72541706..72544690-chr11:72549896..72552150,3	MCF-7	breast:
7	chr11:72525602..72528132-chr11:72542204..72544466,2	K562	blood:
8	chr11:72531684..72535625-chr11:72540135..72544294,5	MCF-7	breast:
9	chr11:72532250..72534895-chr11:72539917..72542662,3	K562	blood:
10	chr11:72542136..72544245-chr11:72997946..73000591,2	MCF-7	breast:
11	chr11:72541661..72544573-chr11:72553379..72555257,2	MCF-7	breast:
12	chr11:72542200..72542976-chr11:72951623..72952347,2	K562	blood:
13	chr11:72535347..72538324-chr11:72540089..72543030,3	K562	blood:
14	chr11:72436029..72436827-chr11:72542356..72542945,2	K562	blood:
15	chr11:72542249..72542961-chr11:72886824..72887817,2	K562	blood:
16	chr11:72542031..72542597-chr11:73046223..73046769,2	K562	blood:
17	chr11:72530756..72536501-chr11:72539062..72544380,12	MCF-7	breast:
18	chr11:72541701..72543210-chr11:72888821..72890263,10	K562	blood:
19	chr11:72542052..72543182-chr11:72952910..72954295,8	K562	blood:
20	chr11:72542141..72543239-chr11:72888709..72890185,13	MCF-7	breast:
21	chr11:72541766..72544288-chr11:72546935..72549671,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000256007	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000168010	Chromatin interaction
ENSG00000256568	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1785219	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72528800-72542800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:72529000-72543600	Strong transcription	Dnd41	blood
3	chr11:72533600-72542600	Weak transcription	Stomach Mucosa	stomach
4	chr11:72533600-72542800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:72533600-72542800	Weak transcription	Hela-S3	cervix
6	chr11:72533800-72542600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:72533800-72542600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:72533800-72542600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:72533800-72542600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:72533800-72542600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:72533800-72542600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:72533800-72542600	Weak transcription	HMEC	breast
13	chr11:72533800-72549400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:72534000-72542600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:72534000-72542600	Weak transcription	A549	lung
16	chr11:72534000-72542800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:72534000-72543200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:72534000-72549200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:72534200-72542600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:72534200-72542800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:72534200-72543200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:72534200-72550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:72534400-72542600	Strong transcription	Fetal Stomach	stomach
24	chr11:72534400-72542800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:72534800-72542800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:72535000-72542800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:72536800-72542800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:72538600-72543200	Strong transcription	Primary T cells from cord blood	blood
29	chr11:72539200-72542600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:72539200-72542600	Strong transcription	Fetal Thymus	thymus
31	chr11:72539600-72542600	Weak transcription	HUVEC	blood vessel
32	chr11:72539600-72542600	Weak transcription	Osteobl	bone
33	chr11:72539600-72542800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:72539600-72542800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:72539800-72542600	Weak transcription	Right Atrium	heart
36	chr11:72539800-72542600	Weak transcription	HepG2	liver
37	chr11:72539800-72542600	Weak transcription	NHDF-Ad	bronchial
38	chr11:72539800-72542800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:72539800-72545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:72539800-72546000	Weak transcription	Small Intestine	intestine
41	chr11:72539800-72547200	Weak transcription	HSMM	muscle
42	chr11:72540000-72542600	Strong transcription	Fetal Intestine Small	intestine
43	chr11:72540000-72542600	Weak transcription	Pancreas	Pancrea
44	chr11:72540000-72542800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:72540000-72542800	Strong transcription	Fetal Intestine Large	intestine
46	chr11:72540000-72543600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:72540000-72544600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:72540200-72542600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:72540200-72543000	Weak transcription	Aorta	Aorta
50	chr11:72540200-72543000	Strong transcription	Spleen	Spleen

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