Variant report

Variant	rs6592606
Chromosome Location	chr11:74890850-74890851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236368	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12275982	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56851827	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60209017	0.94[EUR][1000 genomes]
rs61375787	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
2	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
4	chr11:74880800-74911000	Weak transcription	Gastric	stomach
5	chr11:74881200-74905600	Weak transcription	Pancreas	Pancrea
6	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
7	chr11:74883600-74895000	Weak transcription	Colonic Mucosa	Colon
8	chr11:74884800-74894400	Weak transcription	HepG2	liver
9	chr11:74884800-74898200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:74886000-74891800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:74886600-74901600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:74886800-74894600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:74887000-74893000	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:74887000-74902800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:74887200-74891800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:74887200-74892600	Weak transcription	Fetal Stomach	stomach
17	chr11:74887200-74892600	Weak transcription	Left Ventricle	heart
18	chr11:74887200-74892600	Weak transcription	Lung	lung
19	chr11:74887200-74901200	Weak transcription	Right Atrium	heart
20	chr11:74887400-74892400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:74887400-74892400	Weak transcription	Placenta	Placenta
22	chr11:74887400-74892600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:74887400-74892600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:74887600-74891800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:74887600-74891800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:74887600-74892000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:74887800-74892800	Weak transcription	Adipose Nuclei	Adipose
28	chr11:74888000-74892200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:74888000-74892600	Weak transcription	Right Ventricle	heart
30	chr11:74888200-74892600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:74888600-74892800	Weak transcription	Fetal Intestine Large	intestine
32	chr11:74888600-74894800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:74889800-74892600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:74890200-74895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:74890800-74892200	Genic enhancers	Liver	Liver
36	chr11:74890800-74899800	Strong transcription	Fetal Intestine Small	intestine

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