Variant report

Variant	rs6593203
Chromosome Location	chr7:50882272-50882273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7793487	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv824091	chr7:50828682-50885984	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50862200-50889000	Weak transcription	Right Atrium	heart
2	chr7:50879200-50882400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:50879400-50882400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:50879400-50882400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:50879400-50882600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:50879600-50882400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:50879600-50882400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:50879800-50882400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:50879800-50882400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:50879800-50882400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:50880000-50882400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:50880800-50885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:50880800-50889000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:50880800-50889000	Weak transcription	Osteobl	bone
15	chr7:50880800-50894600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:50881000-50885800	Weak transcription	NH-A	brain
17	chr7:50881200-50882800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:50881200-50885000	Weak transcription	HUVEC	blood vessel
19	chr7:50881200-50889000	Weak transcription	Pancreas	Pancrea
20	chr7:50881400-50887000	Weak transcription	Hela-S3	cervix
21	chr7:50881600-50883200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:50882000-50882400	Enhancers	K562	blood
23	chr7:50882200-50882400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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