Variant report

Variant	rs6593399
Chromosome Location	chr10:44596885-44596886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11238835	1.00[ASN][1000 genomes]
rs11238837	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11238839	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11238850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11238860	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11238861	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11238868	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12358579	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1384333	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58920354	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61855683	1.00[ASN][1000 genomes]
rs61856555	1.00[ASN][1000 genomes]
rs61856556	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44595000-44597200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:44595200-44597000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:44596000-44597200	Enhancers	Rectal Smooth Muscle	rectum
4	chr10:44596200-44597000	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:44596400-44597000	Enhancers	Colon Smooth Muscle	Colon
6	chr10:44596600-44597000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:44596600-44597000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:44596600-44597200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:44596600-44597200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:44596600-44597200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:44596600-44597400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:44596600-44597400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:44596800-44597200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:44596800-44597200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:44596800-44597200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:44596800-44597200	Enhancers	Fetal Kidney	kidney
17	chr10:44596800-44597400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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