Variant report

Variant	rs6593435
Chromosome Location	chr10:45156644-45156645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4948639	1.00[AMR][1000 genomes]
rs4948911	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3373331	chr10:45156246-45160444	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6593435	ALOX5	cis	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45154800-45158000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45155000-45156800	Enhancers	HSMMtube	muscle
3	chr10:45155000-45159600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:45155200-45157400	Weak transcription	Aorta	Aorta
5	chr10:45155800-45156800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:45156000-45156800	Enhancers	Pancreas	Pancrea
7	chr10:45156200-45158000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:45156400-45157200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:45156400-45157600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:45156400-45157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:45156400-45161600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:45156600-45157000	Weak transcription	Fetal Stomach	stomach
14	chr10:45156600-45157600	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links