Variant report

Variant	rs6593446
Chromosome Location	chr10:45373836-45373837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11239225	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052977	chr10:45203117-45373945	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052669	chr10:45208025-45373945	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044334	chr10:45210690-45373945	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517161	chr10:45210690-45416256	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1050496	chr10:45227530-45382154	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831844	chr10:45228791-45407762	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45361000-45374000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:45365200-45374000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:45369400-45374000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:45369600-45374000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:45370000-45374000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:45370000-45374000	Weak transcription	Liver	Liver
7	chr10:45370000-45374000	Weak transcription	Brain Substantia Nigra	brain
8	chr10:45370000-45374000	Weak transcription	Fetal Lung	lung
9	chr10:45370000-45374000	Weak transcription	HSMMtube	muscle
10	chr10:45370000-45374400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:45370200-45374000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:45370200-45374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:45370200-45374000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:45370200-45374000	Weak transcription	Fetal Brain Female	brain
15	chr10:45370200-45374000	Weak transcription	Fetal Stomach	stomach
16	chr10:45370200-45374000	Weak transcription	Ovary	ovary
17	chr10:45370200-45374000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:45370400-45374000	Weak transcription	HepG2	liver
19	chr10:45370600-45374000	Weak transcription	Fetal Heart	heart
20	chr10:45370600-45374000	Weak transcription	Left Ventricle	heart
21	chr10:45370600-45374000	Weak transcription	Psoas Muscle	Psoas
22	chr10:45370600-45374000	Weak transcription	Right Ventricle	heart
23	chr10:45370600-45374200	Weak transcription	Right Atrium	heart
24	chr10:45371400-45374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:45372200-45374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:45372200-45374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:45372200-45374000	Weak transcription	Gastric	stomach
28	chr10:45372800-45374000	Weak transcription	Pancreas	Pancrea
29	chr10:45373400-45374000	Enhancers	Stomach Smooth Muscle	stomach
30	chr10:45373800-45374000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:45373800-45374000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:45373800-45374000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:45373800-45374000	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:45373800-45374000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:45373800-45374000	Enhancers	Brain Hippocampus Middle	brain
36	chr10:45373800-45374000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:45373800-45374000	Enhancers	Dnd41	blood
38	chr10:45373800-45374000	Enhancers	HMEC	breast
39	chr10:45373800-45374200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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