Variant report

Variant	rs6594323
Chromosome Location	chr5:107954485-107954486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs34304283	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34465355	0.88[EUR][1000 genomes]
rs34961984	0.87[EUR][1000 genomes]
rs35153895	0.88[EUR][1000 genomes]
rs35852631	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35858291	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36019130	0.88[EUR][1000 genomes]
rs59214651	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61236031	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67326538	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6871967	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71592759	0.88[EUR][1000 genomes]
rs72785503	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72785509	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7444560	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7709109	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7731577	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107949000-107958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107953000-107954600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:107953400-107954600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:107953600-107956600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:107953800-107954600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:107954000-107956600	Weak transcription	Placenta	Placenta
7	chr5:107954200-107954600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107954400-107971400	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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