Variant report

Variant	rs6597081
Chromosome Location	chr6:4604347-4604348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4585158..4587342-chr6:4603749..4606503,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2007513	0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4599800-4604400	Enhancers	NHEK	skin
2	chr6:4600000-4604400	Enhancers	HMEC	breast
3	chr6:4600000-4606800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:4600400-4604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:4601000-4607000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:4601200-4606400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:4601200-4606400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:4601200-4606400	Weak transcription	Right Ventricle	heart
9	chr6:4601400-4607000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:4601600-4606000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:4601600-4606800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:4601800-4607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:4602400-4604400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:4602400-4604400	Enhancers	Placenta	Placenta
15	chr6:4602600-4606400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:4602800-4604400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:4603000-4604400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:4603000-4604400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:4603000-4604400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:4603000-4604400	Enhancers	NH-A	brain
21	chr6:4603000-4604600	Enhancers	HSMM	muscle
22	chr6:4603200-4604400	Enhancers	Fetal Heart	heart
23	chr6:4603200-4604400	Enhancers	NHDF-Ad	bronchial
24	chr6:4603200-4604400	Enhancers	Osteobl	bone
25	chr6:4603400-4608800	Weak transcription	Spleen	Spleen
26	chr6:4603600-4606400	Weak transcription	Adipose Nuclei	Adipose
27	chr6:4603600-4606800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:4603600-4607200	Weak transcription	Esophagus	oesophagus
29	chr6:4603800-4604400	Enhancers	HUVEC	blood vessel
30	chr6:4603800-4606400	Weak transcription	Lung	lung
31	chr6:4604000-4604400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:4604000-4604600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:4604000-4606800	Weak transcription	HSMMtube	muscle
34	chr6:4604000-4607200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:4604000-4607200	Weak transcription	NHLF	lung
36	chr6:4604200-4604400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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