Variant report

Variant	rs6601224
Chromosome Location	chr5:177609343-177609344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177604192..177606975-chr5:177607801..177609756,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10040744	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10479619	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11249793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11747580	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28806942	0.82[EUR][1000 genomes]
rs55710845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897423	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9286053	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9329134	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
4	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
5	nsv883190	chr5:177532201-177620189	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
7	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
8	nsv883193	chr5:177591495-177620189	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv883194	chr5:177604268-177620189	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177605400-177609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:177606600-177610800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:177607200-177609400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:177607400-177610600	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:177608400-177609400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:177608800-177609800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:177608800-177609800	Enhancers	Primary B cells from cord blood	blood
8	chr5:177608800-177609800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:177608800-177610000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:177609000-177609800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:177609000-177609800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:177609000-177609800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr5:177609000-177609800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:177609000-177610000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:177609000-177610000	Enhancers	Fetal Thymus	thymus
16	chr5:177609200-177609400	Flanking Active TSS	K562	blood
17	chr5:177609200-177609600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:177609200-177609600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:177609200-177609800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:177609200-177609800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:177609200-177609800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:177609200-177609800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:177609200-177609800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr5:177609200-177609800	Enhancers	Primary B cells from peripheral blood	blood
25	chr5:177609200-177609800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:177609200-177609800	Enhancers	Thymus	Thymus
27	chr5:177609200-177610000	Enhancers	HUES48 Cell Line	embryonic stem cell

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