Variant report

Variant	rs6601371
Chromosome Location	chr8:9686433-9686434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7007468	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9684200-9689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:9685200-9687800	Enhancers	HepG2	liver
3	chr8:9686200-9686600	Enhancers	Pancreas	Pancrea
4	chr8:9686200-9686600	Enhancers	A549	lung
5	chr8:9686200-9686800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:9686400-9686800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:9686400-9686800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:9686400-9686800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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