Variant report

Variant	rs6601441
Chromosome Location	chr8:10198468-10198469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10191950..10195260-chr8:10197828..10201461,4	MCF-7	breast:
2	chr8:10192939..10195509-chr8:10197374..10200259,2	K562	blood:

Variant related genes	Relation type
ENSG00000249848	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10091197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4841321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4841322	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4841323	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4841324	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6601439	0.97[ASN][1000 genomes]
rs6601440	0.97[ASN][1000 genomes]
rs7837979	0.85[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:10192600-10282400	Weak transcription	Gastric	stomach
3	chr8:10192800-10206400	Weak transcription	Thymus	Thymus
4	chr8:10193000-10215400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
6	chr8:10193200-10203800	Weak transcription	Right Atrium	heart
7	chr8:10193400-10198800	Weak transcription	NHEK	skin
8	chr8:10193400-10202400	Weak transcription	Right Ventricle	heart
9	chr8:10193600-10198800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:10193600-10199400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:10193600-10200600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:10193600-10202800	Weak transcription	Brain Anterior Caudate	brain
13	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:10195800-10199600	Enhancers	Fetal Thymus	thymus
15	chr8:10196000-10200000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:10196000-10200000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:10196000-10200800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:10196600-10199600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:10196800-10198800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:10196800-10199000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:10196800-10199200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:10196800-10199200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:10196800-10199400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:10196800-10200000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:10196800-10208000	Weak transcription	Adipose Nuclei	Adipose
26	chr8:10196800-10214200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:10196800-10228000	Weak transcription	Liver	Liver
28	chr8:10197000-10200000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:10197800-10200200	Weak transcription	Fetal Brain Female	brain
30	chr8:10197800-10200400	Weak transcription	Fetal Brain Male	brain
31	chr8:10198400-10206400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links