Variant report

Variant	rs6601815
Chromosome Location	chr10:4165394-4165395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10751960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10751961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10904194	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10904197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12412777	1.00[JPT][hapmap]
rs1885475	0.93[ASN][1000 genomes]
rs1885477	0.85[JPT][hapmap]
rs2146058	1.00[ASN][1000 genomes]
rs6601814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7069371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7082307	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
3	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
4	chr10:4163000-4173400	Weak transcription	NHLF	lung
5	chr10:4164000-4167000	Weak transcription	Left Ventricle	heart
6	chr10:4164000-4170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:4164200-4165600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:4164400-4166000	Enhancers	Fetal Heart	heart
9	chr10:4164400-4169600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr10:4164600-4169600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:4165000-4165400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:4165200-4165400	Enhancers	Right Ventricle	heart
13	chr10:4165200-4166000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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