Variant report

Variant	rs6602354
Chromosome Location	chr10:6012301-6012302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:6012044-6012400	K562	blood:	n/a	n/a
2	FOS	chr10:6012085-6012442	HUVEC	blood vessel:	n/a	n/a
3	GATA2	chr10:6011972-6012475	HUVEC	blood vessel:	n/a	n/a
4	IRF1	chr10:6012082-6012549	K562	blood:	n/a	n/a
5	JUN	chr10:6012085-6012421	HUVEC	blood vessel:	n/a	n/a
6	ATF1	chr10:6012080-6012312	K562	blood:	n/a	n/a
7	IRF1	chr10:6012197-6012630	K562	blood:	n/a	n/a
8	RCOR1	chr10:6012098-6012560	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6007113..6010005-chr10:6010444..6013465,3	K562	blood:
2	chr10:6007109..6010218-chr10:6012189..6014551,3	MCF-7	breast:
3	chr10:6012288..6016464-chr10:6016504..6020511,6	MCF-7	breast:

No data

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10732257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1977263	0.81[EUR][1000 genomes]
rs3136614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs41290327	0.81[ASN][1000 genomes]
rs4749858	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6602357	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7076858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7901803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8177584	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8177709	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs8177710	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr10:5980000-6013200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
4	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
5	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
6	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
7	chr10:5993600-6013200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:5994000-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:5994200-6012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:5995400-6012400	Weak transcription	Small Intestine	intestine
11	chr10:5999400-6017600	Weak transcription	Primary B cells from cord blood	blood
12	chr10:6001000-6017400	Weak transcription	NHLF	lung
13	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
14	chr10:6002800-6012400	Weak transcription	Hela-S3	cervix
15	chr10:6002800-6013000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:6004200-6013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:6005400-6013400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:6005400-6017400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:6005600-6013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:6005800-6012800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:6005800-6013000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:6005800-6013400	Weak transcription	Esophagus	oesophagus
25	chr10:6005800-6018200	Weak transcription	Ovary	ovary
26	chr10:6007400-6012800	Weak transcription	Colonic Mucosa	Colon
27	chr10:6007400-6013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:6007400-6013200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:6007600-6012800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
31	chr10:6008000-6013000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:6008400-6013400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:6008400-6017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:6008600-6013000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:6008800-6013000	Weak transcription	Adipose Nuclei	Adipose
36	chr10:6010400-6013400	Enhancers	Liver	Liver
37	chr10:6010600-6013000	Enhancers	Stomach Mucosa	stomach
38	chr10:6010800-6012800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:6010800-6012800	Weak transcription	Gastric	stomach
40	chr10:6010800-6013000	Enhancers	K562	blood
41	chr10:6010800-6013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:6010800-6013200	Enhancers	HUVEC	blood vessel
43	chr10:6010800-6017800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:6011000-6012800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:6011000-6012800	Weak transcription	Left Ventricle	heart
46	chr10:6011000-6012800	Weak transcription	Lung	lung
47	chr10:6011000-6012800	Weak transcription	Pancreas	Pancrea
48	chr10:6011000-6012800	Weak transcription	GM12878-XiMat	blood
49	chr10:6011000-6013000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:6011000-6013200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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