Variant report

Variant	rs660508
Chromosome Location	chr5:115958027-115958028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9687139	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115942400-115964200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115950000-115960800	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:115950200-115962000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:115956400-115964400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:115956800-115961400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:115957200-115958400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:115957400-115958200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:115957400-115958800	Enhancers	Brain Hippocampus Middle	brain
9	chr5:115957400-115958800	Enhancers	Brain Substantia Nigra	brain
10	chr5:115957400-115959000	Enhancers	Brain Anterior Caudate	brain
11	chr5:115957600-115959000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr5:115957600-115961400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:115957600-115961400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:115957800-115960800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:115957800-115961600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:115957800-115961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:115957800-115965000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:115957800-115965000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:115958000-115961600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:115958000-115961600	Weak transcription	Brain Angular Gyrus	brain
21	chr5:115958000-115961800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:115958000-115964400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:115958000-115965000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links