Variant report

Variant	rs6606568
Chromosome Location	chr9:140118286-140118287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr9:140118162-140118476	GM12878	blood:	n/a	n/a
2	BCLAF1	chr9:140117903-140118412	GM12878	blood:	n/a	chr9:140118020-140118029 chr9:140118360-140118373
3	MAX	chr9:140117646-140118314	Hela-S3	cervix:	n/a	chr9:140117870-140117880 chr9:140117914-140117924
4	MAX	chr9:140117802-140118335	K562	blood:	n/a	chr9:140117870-140117880 chr9:140117914-140117924
5	GTF2F1	chr9:140117519-140118389	K562	blood:	n/a	n/a
6	POLR2A	chr9:140117601-140118720	GM19099	blood:	n/a	n/a
7	POLR2A	chr9:140117550-140118537	GM12878	blood:	n/a	n/a
8	POLR2A	chr9:140116797-140118873	ProgFib	skin:	n/a	n/a
9	RUNX3	chr9:140117734-140118402	GM12878	blood:	n/a	n/a
10	ELF1	chr9:140117724-140118503	SK-N-SH	brain:	n/a	chr9:140118133-140118146
11	POLR2A	chr9:140117608-140118659	MCF10A-Er-Src	breast:	n/a	n/a
12	MTA3	chr9:140117067-140118589	GM12878	blood:	n/a	n/a
13	MAX	chr9:140117595-140118504	K562	blood:	n/a	chr9:140118411-140118421 chr9:140117870-140117880 chr9:140117914-140117924 chr9:140118455-140118464
14	POLR2A	chr9:140118003-140118442	K562	blood:	n/a	n/a
15	NRF1	chr9:140117923-140118572	GM12878	blood:	n/a	chr9:140118081-140118095 chr9:140118084-140118095 chr9:140118084-140118098 chr9:140118375-140118389 chr9:140118141-140118155 chr9:140118141-140118152 chr9:140117929-140117938 chr9:140118084-140118093 chr9:140118143-140118152 chr9:140118141-140118152 chr9:140118138-140118152 chr9:140118086-140118095 chr9:140118084-140118095
16	FOXM1	chr9:140117774-140118386	GM12878	blood:	n/a	n/a
17	POLR2A	chr9:140118006-140118472	A549	lung:	n/a	n/a
18	YY1	chr9:140117804-140118354	GM12878	blood:	n/a	chr9:140117861-140117875 chr9:140117929-140117938 chr9:140117913-140117922 chr9:140117869-140117878
19	POLR2A	chr9:140117988-140118549	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr9:140117876-140118359	SK-N-SH	brain:	n/a	n/a
21	NFIC	chr9:140117909-140118306	HepG2	liver:	n/a	n/a
22	POLR2A	chr9:140117276-140118658	HepG2	liver:	n/a	n/a
23	POLR2A	chr9:140117336-140118504	ECC-1	luminal epithelium:	n/a	n/a
24	YY1	chr9:140117778-140118338	ECC-1	luminal epithelium:	n/a	chr9:140117861-140117875 chr9:140117929-140117938 chr9:140117913-140117922 chr9:140117869-140117878
25	E2F6	chr9:140117440-140118472	A549	lung:	n/a	chr9:140118410-140118419 chr9:140118142-140118151 chr9:140117864-140117874 chr9:140117869-140117878 chr9:140118139-140118149 chr9:140118085-140118094 chr9:140117929-140117938
26	JUND	chr9:140117624-140118463	A549	lung:	n/a	chr9:140118023-140118037 chr9:140117937-140117951 chr9:140117930-140117939
27	TBL1XR1	chr9:140117824-140118315	K562	blood:	n/a	n/a
28	POLR2A	chr9:140117585-140118563	K562	blood:	n/a	n/a
29	SIN3AK20	chr9:140117781-140118598	MCF-7	breast:	n/a	n/a
30	MYC	chr9:140117668-140118481	NB4	blood:	n/a	chr9:140118411-140118421 chr9:140117870-140117880 chr9:140117914-140117924 chr9:140118455-140118464
31	HDAC2	chr9:140117837-140118384	HepG2	liver:	n/a	n/a
32	MYC	chr9:140117768-140118288	MCF10A-Er-Src	breast:	n/a	chr9:140117870-140117880 chr9:140117914-140117924
33	SP1	chr9:140117715-140118413	GM12878	blood:	n/a	chr9:140117928-140117937 chr9:140117928-140117938 chr9:140117927-140117939 chr9:140117928-140117937 chr9:140117908-140117920 chr9:140117928-140117942 chr9:140117868-140117877 chr9:140117928-140117938 chr9:140117927-140117939 chr9:140117867-140117879 chr9:140118125-140118137 chr9:140117908-140117920 chr9:140117868-140117878 chr9:140117867-140117879 chr9:140117929-140117938 chr9:140117869-140117878 chr9:140118125-140118137 chr9:140117868-140117878 chr9:140118122-140118136 chr9:140117910-140117919 chr9:140117868-140117877 chr9:140117886-140117898 chr9:140117868-140117882
34	MAFK	chr9:140117962-140118569	K562	blood:	n/a	n/a
35	BCL3	chr9:140117835-140118596	A549	lung:	n/a	chr9:140118020-140118029 chr9:140118360-140118373
36	IRF3	chr9:140118152-140118295	GM12878	blood:	n/a	n/a
37	POLR2A	chr9:140117916-140118459	K562	blood:	n/a	n/a
38	SP2	chr9:140117926-140118332	H1-hESC	embryonic stem cell:	n/a	chr9:140118121-140118136
39	ELK4	chr9:140117972-140118587	Hela-S3	cervix:	n/a	chr9:140118132-140118143
40	STAT5A	chr9:140117928-140118398	GM12878	blood:	n/a	chr9:140118056-140118063 chr9:140118071-140118079 chr9:140118010-140118030
41	GATA1	chr9:140118122-140118752	PBDE	blood:	n/a	chr9:140118544-140118551 chr9:140118544-140118551 chr9:140118544-140118551 chr9:140118544-140118554
42	POLR2A	chr9:140117879-140118613	HUVEC	blood vessel:	n/a	n/a
43	SIN3AK20	chr9:140117872-140118354	H1-hESC	embryonic stem cell:	n/a	n/a
44	RELA	chr9:140117867-140118381	GM19193	blood:	n/a	chr9:140118021-140118030 chr9:140118021-140118030
45	TBL1XR1	chr9:140117646-140118315	K562	blood:	n/a	n/a
46	POLR2A	chr9:140116772-140120681	K562	blood:	n/a	n/a
47	POU2F2	chr9:140117867-140118468	GM12878	blood:	n/a	chr9:140118455-140118467 chr9:140118122-140118134 chr9:140118407-140118419 chr9:140118410-140118422
48	POLR2A	chr9:140118005-140118498	GM12878	blood:	n/a	n/a
49	HCFC1	chr9:140117631-140118408	K562	blood:	n/a	n/a
50	ZNF384	chr9:140118258-140118389	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140118274-140118324	AG10803	skin:	n/a
2	chr9:140118274-140118324	HCM	heart:	n/a
3	chr9:140118274-140118324	ovcar-3	ovarian:	n/a
4	chr9:140118274-140118324	SAEC	small airway:	n/a
5	chr9:140118274-140118324	HRCEpiC	kidney:	n/a
6	chr9:140118274-140118324	A549	lung:	n/a
7	chr9:140118274-140118324	PFSK-1	brain:	n/a
8	chr9:140118274-140118324	CMK	blood:	n/a
9	chr9:140118274-140118324	HL-60	blood:	n/a
10	chr9:140118274-140118324	NT2-D1	testis:	n/a
11	chr9:140118274-140118324	Hepatocyte	liver:	n/a
12	chr9:140118274-140118324	U87	brain:	n/a
13	chr9:140118274-140118324	HRPEpiC	eye:	n/a
14	chr9:140118274-140118324	LNCaP	prostate:	n/a
15	chr9:140118274-140118324	GM06990	blood:	n/a
16	chr9:140118274-140118324	Caco-2	colon:	n/a
17	chr9:140118274-140118324	AG04449	skin:	fetal
18	chr9:140118274-140118324	HCF	heart:	n/a
19	chr9:140118274-140118324	SKMC	muscle:	n/a
20	chr9:140118274-140118324	HRE	kidney:	n/a
21	chr9:140118274-140118324	H1-hESC	embryonic stem cell:	embryo
22	chr9:140118274-140118324	HepG2	liver:	n/a
23	chr9:140118274-140118324	SK-N-SH_RA	brain:	n/a
24	chr9:140118274-140118324	GM19239	blood:	n/a
25	chr9:140118274-140118324	BJ	skin:	n/a
26	chr9:140118274-140118324	ECC-1	luminal epithelium:	n/a
27	chr9:140118274-140118324	MCF-7	breast:	n/a
28	chr9:140118274-140118324	IMR90	lung:	fetal
29	chr9:140118274-140118324	HMEC	breast:	n/a
30	chr9:140118274-140118324	RPTEC	kidney:	n/a
31	chr9:140118274-140118324	ProgFib	skin:	n/a
32	chr9:140118274-140118324	NB4	blood:	n/a
33	chr9:140118274-140118324	HPAEpiC	pulmonary alveolar:	n/a
34	chr9:140118274-140118324	HCT-116	colon:	n/a
35	chr9:140118274-140118324	HEEpiC	esophagus:	n/a
36	chr9:140118274-140118324	T-47D	breast:	n/a
37	chr9:140118274-140118324	NH-A	brain:	n/a
38	chr9:140118274-140118324	AG09309	skin:	n/a
39	chr9:140118274-140118324	GM12891	blood:	n/a
40	chr9:140118274-140118324	Hela-S3	cervix:	n/a
41	chr9:140118274-140118324	NHBE	bronchial:	n/a
42	chr9:140118274-140118324	AG09319	gingival:	n/a
43	chr9:140118274-140118324	HEK293	kidney:	embryo
44	chr9:140118274-140118324	PrEC	prostate:	n/a
45	chr9:140118274-140118324	HAEpiC	amniotic membrane:	n/a
46	chr9:140118274-140118324	NHDF-neo	bronchial:	n/a
47	chr9:140118274-140118324	SK-N-SH	brain:	n/a
48	chr9:140118274-140118324	K562	blood:	n/a
49	chr9:140118274-140118324	SK-N-MC	brain:	n/a
50	chr9:140118274-140118324	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140082542..140083154-chr9:140117699..140118625,2	NB4	blood:
2	chr9:140009529..140011918-chr9:140118015..140119680,2	K562	blood:
3	chr9:139920807..139923446-chr9:140116890..140119444,3	MCF-7	breast:
4	chr9:139942867..139945217-chr9:140116522..140119500,2	K562	blood:
5	chr5:40835664..40836223-chr9:140117859..140118535,2	Hela-S3	cervix:
6	chr9:139979811..139981323-chr9:140116227..140118814,2	K562	blood:
7	chr9:139973218..139984066-chr9:140109898..140123246,33	MCF-7	breast:
8	chr9:140117912..140119743-chr9:140194726..140197448,3	K562	blood:
9	chr9:139963528..139966657-chr9:140117731..140119974,3	K562	blood:
10	chr9:139948345..139950575-chr9:140118073..140121229,3	MCF-7	breast:
11	chr14:35872612..35875197-chr9:140117227..140118845,2	MCF-7	breast:
12	chr9:140117995..140119573-chr9:140196159..140198713,2	K562	blood:
13	chr9:139885303..139887550-chr9:140116990..140118803,2	MCF-7	breast:
14	chr9:139843553..139845342-chr9:140116924..140119676,2	MCF-7	breast:
15	chr9:140116174..140118873-chr9:140338820..140340591,2	MCF-7	breast:
16	chr9:139961394..139967081-chr9:140115756..140120965,8	MCF-7	breast:
17	chr2:102132930..102135220-chr9:140116739..140118287,2	MCF-7	breast:
18	chr9:139621600..139623277-chr9:140116361..140118621,2	MCF-7	breast:
19	chr9:139916404..139918538-chr9:140117061..140118699,2	MCF-7	breast:
20	chr9:139938714..139940757-chr9:140117895..140119657,2	MCF-7	breast:
21	chr9:140117969..140119690-chr9:140505138..140507974,2	MCF-7	breast:
22	chr9:139979223..139981323-chr9:140116227..140119584,4	K562	blood:
23	chr9:140008433..140011918-chr9:140117998..140119680,4	K562	blood:
24	chr7:107203377..107205757-chr9:140116961..140119781,2	MCF-7	breast:

Variant related genes	Relation type
RNF208	TF binding region
C9orf169	TF binding region
RNF224	TF binding region
RNF224	CpG island
C9orf169	CpG island
RNF208	CpG island
ENSG00000164597	Chromatin interaction
ENSG00000186193	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000197070	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000105865	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000176978	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000107281	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11522281	1.00[MEX][hapmap]
rs11535663	1.00[LWK][hapmap]
rs35563407	1.00[MEX][hapmap]
rs35606463	1.00[MEX][hapmap]
rs7029134	1.00[MEX][hapmap]
rs9721582	1.00[LWK][hapmap]
rs9776729	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
2	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
3	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
5	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
6	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
7	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
9	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
10	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
11	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
12	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
13	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
14	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
15	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
16	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
17	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
18	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
19	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
20	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
22	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
23	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
24	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
25	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
26	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
27	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
28	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
29	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
30	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
31	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
32	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
33	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
34	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
35	nsv894560	chr9:139906359-140135118	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
36	nsv894561	chr9:139906359-140143801	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	252 gene(s)	inside rSNPs	diseases
37	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
38	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
39	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
40	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
41	nsv894569	chr9:139926402-140118448	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	123 gene(s)	inside rSNPs	diseases
42	nsv894571	chr9:139929435-140135118	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
43	nsv894572	chr9:139934020-140135118	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
44	nsv894573	chr9:139934020-140218978	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
45	nsv894578	chr9:139935853-140118448	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
46	nsv894579	chr9:139935853-140135118	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	153 gene(s)	inside rSNPs	diseases
47	nsv894582	chr9:139950351-140218978	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
48	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
49	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
50	nsv894585	chr9:139963091-140123584	Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	123 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140116000-140118400	Active TSS	Brain Angular Gyrus	brain
2	chr9:140116000-140118400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr9:140116000-140118600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:140116000-140118600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr9:140116000-140118600	Active TSS	Psoas Muscle	Psoas
6	chr9:140116000-140118800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr9:140116000-140118800	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr9:140116200-140118400	Active TSS	Colon Smooth Muscle	Colon
9	chr9:140116200-140118600	Active TSS	Aorta	Aorta
10	chr9:140116400-140118600	Active TSS	Small Intestine	intestine
11	chr9:140116800-140118800	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr9:140117000-140118600	Active TSS	A549	lung
13	chr9:140117200-140118600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:140117200-140118600	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr9:140117200-140118800	Active TSS	Fetal Kidney	kidney
16	chr9:140117400-140118600	Active TSS	Primary T cells from cord blood	blood
17	chr9:140117600-140118400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:140117600-140118400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr9:140117600-140118400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr9:140117600-140118400	Active TSS	Brain Anterior Caudate	brain
21	chr9:140117600-140118400	Active TSS	Brain Germinal Matrix	brain
22	chr9:140117600-140118400	Active TSS	Brain Substantia Nigra	brain
23	chr9:140117600-140118400	Active TSS	Fetal Brain Female	brain
24	chr9:140117600-140118400	Active TSS	Fetal Heart	heart
25	chr9:140117600-140118400	Active TSS	Gastric	stomach
26	chr9:140117600-140118400	Active TSS	Left Ventricle	heart
27	chr9:140117600-140118600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:140117600-140118600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:140117600-140118600	Active TSS	Lung	lung
30	chr9:140117600-140118600	Active TSS	Ovary	ovary
31	chr9:140117600-140118600	Active TSS	GM12878-XiMat	blood
32	chr9:140117600-140118800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr9:140117600-140118800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:140117600-140118800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:140117600-140118800	Active TSS	Right Atrium	heart
36	chr9:140117600-140119800	Active TSS	Esophagus	oesophagus
37	chr9:140117800-140118400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:140117800-140118400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:140117800-140118400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:140117800-140118400	Active TSS	Primary monocytes fromperipheralblood	blood
41	chr9:140117800-140118400	Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr9:140117800-140118400	Active TSS	Primary B cells from peripheral blood	blood
43	chr9:140117800-140118400	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr9:140117800-140118400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:140117800-140118400	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr9:140117800-140118400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:140117800-140118400	Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr9:140117800-140118400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:140117800-140118400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:140117800-140118400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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