Variant report

Variant	rs6615352
Chromosome Location	chrX:91525627-91525628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12007684	1.00[CEU][hapmap]
rs12011840	1.00[CEU][hapmap]
rs12014732	1.00[CEU][hapmap]
rs12014801	1.00[CEU][hapmap]
rs12556087	1.00[CEU][hapmap]
rs12556336	1.00[CEU][hapmap]
rs12557973	1.00[CEU][hapmap]
rs12559956	1.00[CEU][hapmap]
rs2522768	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs5984916	0.95[YRI][hapmap]
rs5984917	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs5984918	1.00[CEU][hapmap]
rs5984925	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6615351	1.00[CEU][hapmap]
rs6615374	1.00[CEU][hapmap]
rs6618951	0.91[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91524000-91528000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chrX:91524600-91526800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chrX:91524800-91525800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chrX:91524800-91527600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chrX:91525200-91525800	Enhancers	H1 Cell Line	embryonic stem cell
6	chrX:91525400-91526000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chrX:91525400-91526600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chrX:91525600-91526000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chrX:91525600-91526000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chrX:91525600-91526000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chrX:91525600-91526000	Enhancers	Brain Anterior Caudate	brain
12	chrX:91525600-91527600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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