Variant report

Variant	rs6618937
Chromosome Location	chrX:91526040-91526041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs5984163	1.00[JPT][hapmap]
rs5984915	0.85[JPT][hapmap]
rs6522513	1.00[JPT][hapmap]
rs6618931	0.85[JPT][hapmap]
rs6618932	0.85[JPT][hapmap]
rs6618933	0.85[JPT][hapmap]
rs6618943	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91524000-91528000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chrX:91524600-91526800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chrX:91524800-91527600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chrX:91525400-91526600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chrX:91525600-91527600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:91525800-91526400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chrX:91525800-91526400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chrX:91526000-91526200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chrX:91526000-91526200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chrX:91526000-91526200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chrX:91526000-91526200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chrX:91526000-91526400	Enhancers	Hela-S3	cervix
13	chrX:91526000-91526600	Active TSS	Brain Angular Gyrus	brain
14	chrX:91526000-91526600	Active TSS	Brain Hippocampus Middle	brain
15	chrX:91526000-91526600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chrX:91526000-91527600	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links