Variant report

Variant	rs6621543
Chromosome Location	chrX:79270131-79270132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1429591	0.85[JPT][hapmap]
rs4578100	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs6616415	0.83[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs6616419	0.82[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs6621536	0.88[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6621539	0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs6621546	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs742307	0.83[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs742308	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3370157	chrX:78921830-79315481	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv918040	chrX:78945886-79393258	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3412365	chrX:79161145-79406542	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv521266	chrX:79231201-79274979	Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79269200-79270400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chrX:79269600-79270800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chrX:79269600-79271800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chrX:79269800-79270400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chrX:79270000-79270200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chrX:79270000-79270600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
7	chrX:79270000-79270800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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