Variant report

Variant	rs663234
Chromosome Location	chr1:57735595-57735596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2551484	0.84[CHB][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs548897	0.81[EUR][1000 genomes]
rs561248	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs666868	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2754702	chr1:57716116-57743244	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57729400-57736400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57734600-57737400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57734800-57735600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:57735000-57735600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:57735000-57735600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:57735000-57736200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:57735000-57740400	Strong transcription	Fetal Intestine Small	intestine
8	chr1:57735000-57742400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:57735200-57736000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:57735200-57736000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:57735200-57747200	Weak transcription	Esophagus	oesophagus
12	chr1:57735400-57735600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:57735400-57735600	Enhancers	Fetal Brain Male	brain
14	chr1:57735400-57735800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:57735400-57736000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:57735400-57736200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:57735400-57737400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:57735400-57737600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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