Variant report

Variant	rs663987
Chromosome Location	chr1:210399239-210399240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119446	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11119448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55792645	1.00[EUR][1000 genomes]
rs55884682	1.00[EUR][1000 genomes]
rs56215802	1.00[EUR][1000 genomes]
rs56397999	1.00[EUR][1000 genomes]
rs59742593	1.00[EUR][1000 genomes]
rs600232	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs621684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs653935	1.00[EUR][1000 genomes]
rs663132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6681011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685743	1.00[EUR][1000 genomes]
rs73074137	1.00[EUR][1000 genomes]
rs74156132	1.00[EUR][1000 genomes]
rs7555552	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210397200-210400600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:210397200-210400800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:210397200-210405000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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