Variant report

Variant	rs664211
Chromosome Location	chr12:121035474-121035475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10774556	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1167698	0.81[EUR][1000 genomes]
rs1167711	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1167712	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2292681	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs608724	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs636737	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7138112	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73405639	0.92[ASN][1000 genomes]
rs73405641	0.88[ASN][1000 genomes]
rs787829	0.82[AMR][1000 genomes]
rs787947	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs664211	POP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121030200-121037200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:121035200-121035600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:121035200-121035800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:121035400-121038200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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