Variant report
| Variant | rs66459922 |
|---|---|
| Chromosome Location | chr7:80723356-80723357 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000075223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10225589 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10270770 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2697945 | 0.83[AFR][1000 genomes] |
| rs2697946 | 0.89[AFR][1000 genomes] |
| rs2886862 | 0.80[EUR][1000 genomes] |
| rs3914074 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6467564 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6965450 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6968574 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv888552 | chr7:80683308-80755310 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv888553 | chr7:80683308-80766407 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv888554 | chr7:80695828-80755310 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv888555 | chr7:80695828-80766407 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv888556 | chr7:80695828-80797794 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 7 | nsv966722 | chr7:80718235-80723540 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv831044 | chr7:80721773-80918591 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
