Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2260462	0.89[EUR][1000 genomes]
rs2576113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2576118	0.89[EUR][1000 genomes]
rs2576132	0.89[EUR][1000 genomes]
rs2576143	0.89[EUR][1000 genomes]
rs2576144	0.89[EUR][1000 genomes]
rs2782515	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2782517	0.89[EUR][1000 genomes]
rs2782518	0.89[EUR][1000 genomes]
rs2784558	0.89[EUR][1000 genomes]
rs484366	0.83[EUR][1000 genomes]
rs515604	0.89[EUR][1000 genomes]
rs518647	0.89[EUR][1000 genomes]
rs520026	0.93[EUR][1000 genomes]
rs538663	0.89[EUR][1000 genomes]
rs574751	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632059	0.89[EUR][1000 genomes]
rs636911	0.93[EUR][1000 genomes]
rs653228	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs681748	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs688466	0.93[EUR][1000 genomes]
rs795635	0.89[EUR][1000 genomes]
rs795642	0.89[EUR][1000 genomes]
rs795643	0.89[EUR][1000 genomes]
rs795652	0.89[EUR][1000 genomes]
rs795653	0.93[EUR][1000 genomes]
rs795655	0.89[EUR][1000 genomes]
rs795656	0.89[EUR][1000 genomes]
rs797060	0.89[EUR][1000 genomes]
rs7993452	0.89[EUR][1000 genomes]
rs812128	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54737200-54746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:54740400-54744200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:54743800-54744600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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