Variant report

Variant	rs6647477
Chromosome Location	chrX:73643091-73643092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73641312..73645233-chrX:73652537..73656511,3	MCF-7	breast:
2	chrX:73639998..73642268-chrX:73642358..73645836,3	MCF-7	breast:
3	chrX:73641524..73644343-chrX:73668070..73670153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147100	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3429687	chrX:73639127-73643875	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73638800-73643200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chrX:73639400-73643200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chrX:73639400-73643200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chrX:73639400-73643200	Active TSS	Brain Cingulate Gyrus	brain
5	chrX:73639400-73643200	Active TSS	Fetal Kidney	kidney
6	chrX:73639400-73643200	Active TSS	NHDF-Ad	bronchial
7	chrX:73639400-73643400	Active TSS	H1 Cell Line	embryonic stem cell
8	chrX:73639400-73643400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chrX:73639400-73643400	Active TSS	Brain Germinal Matrix	brain
10	chrX:73639400-73643400	Active TSS	HSMMtube	muscle
11	chrX:73639400-73643800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chrX:73639600-73643200	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chrX:73639600-73643400	Active TSS	Colon Smooth Muscle	Colon
14	chrX:73639600-73643600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chrX:73639600-73643600	Active TSS	HSMM	muscle
16	chrX:73639800-73643200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chrX:73639800-73643200	Active TSS	Thymus	Thymus
18	chrX:73639800-73643200	Active TSS	Osteobl	bone
19	chrX:73640000-73643400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chrX:73640000-73643400	Active TSS	Brain Hippocampus Middle	brain
21	chrX:73640000-73643800	Active TSS	Brain Anterior Caudate	brain
22	chrX:73640200-73643400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chrX:73640200-73647200	Weak transcription	Spleen	Spleen
24	chrX:73641600-73643200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chrX:73641800-73643200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chrX:73642200-73643200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chrX:73642200-73643200	Bivalent/Poised TSS	Fetal Brain Female	brain
28	chrX:73642200-73643400	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chrX:73642400-73643200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chrX:73642400-73643200	Weak transcription	A549	lung
31	chrX:73642600-73643400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
32	chrX:73642800-73643200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chrX:73642800-73643200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chrX:73642800-73643200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chrX:73642800-73643200	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chrX:73642800-73643200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
37	chrX:73642800-73643200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
38	chrX:73642800-73643200	Flanking Active TSS	HMEC	breast
39	chrX:73642800-73643600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chrX:73642800-73643600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chrX:73642800-73643600	Enhancers	Placenta Amnion	Placenta Amnion
42	chrX:73642800-73643800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chrX:73642800-73644200	Enhancers	Fetal Heart	heart
44	chrX:73643000-73643200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chrX:73643000-73643200	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chrX:73643000-73643200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chrX:73643000-73643200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chrX:73643000-73643200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chrX:73643000-73643200	Bivalent Enhancer	Adipose Nuclei	Adipose
50	chrX:73643000-73643200	Flanking Active TSS	Liver	Liver

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