Variant report

Variant	rs6647996
Chromosome Location	chrX:75647627-75647628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:75647595-75647645	HRE	kidney:	n/a
2	chrX:75647595-75647645	IMR90	lung:	fetal
3	chrX:75647595-75647645	AoSMC	blood vessel:	n/a
4	chrX:75647595-75647645	ECC-1	luminal epithelium:	n/a
5	chrX:75647595-75647645	HCT-116	colon:	n/a
6	chrX:75647595-75647645	ovcar-3	ovarian:	n/a
7	chrX:75647595-75647645	GM12892	blood:	n/a
8	chrX:75647595-75647645	HCPEpiC	choroid plexus:	n/a
9	chrX:75647595-75647645	LNCaP	prostate:	n/a
10	chrX:75647595-75647645	HPAEpiC	pulmonary alveolar:	n/a
11	chrX:75647595-75647645	MCF10A-Er-Src	breast:	n/a
12	chrX:75647595-75647645	K562	blood:	n/a
13	chrX:75647595-75647645	ProgFib	skin:	n/a
14	chrX:75647595-75647645	CMK	blood:	n/a
15	chrX:75647595-75647645	A549	lung:	n/a
16	chrX:75647595-75647645	AG09309	skin:	n/a
17	chrX:75647595-75647645	U87	brain:	n/a
18	chrX:75647595-75647645	Caco-2	colon:	n/a
19	chrX:75647595-75647645	HEK293	kidney:	embryo
20	chrX:75647595-75647645	NH-A	brain:	n/a
21	chrX:75647595-75647645	PrEC	prostate:	n/a
22	chrX:75647595-75647645	HRPEpiC	eye:	n/a
23	chrX:75647595-75647645	HRCEpiC	kidney:	n/a
24	chrX:75647595-75647645	SKMC	muscle:	n/a
25	chrX:75647595-75647645	Hela-S3	cervix:	n/a
26	chrX:75647595-75647645	H1-hESC	embryonic stem cell:	embryo
27	chrX:75647595-75647645	HepG2	liver:	n/a
28	chrX:75647595-75647645	T-47D	breast:	n/a
29	chrX:75647595-75647645	HCM	heart:	n/a
30	chrX:75647595-75647645	AG04450	lung:	fetal
31	chrX:75647595-75647645	GM12878	blood:	n/a
32	chrX:75647595-75647645	AG10803	skin:	n/a
33	chrX:75647595-75647645	HL-60	blood:	n/a
34	chrX:75647595-75647645	BJ	skin:	n/a
35	chrX:75647595-75647645	HAEpiC	amniotic membrane:	n/a
36	chrX:75647595-75647645	SK-N-SH_RA	brain:	n/a
37	chrX:75647595-75647645	SAEC	small airway:	n/a
38	chrX:75647595-75647645	HEEpiC	esophagus:	n/a
39	chrX:75647595-75647645	PANC-1	pancreas:	n/a
40	chrX:75647595-75647645	HIPEpiC	eye:	n/a
41	chrX:75647595-75647645	SK-N-SH	brain:	n/a
42	chrX:75647595-75647645	Jurkat	blood:	n/a
43	chrX:75647595-75647645	HMEC	breast:	n/a
44	chrX:75647595-75647645	Hepatocyte	liver:	n/a
45	chrX:75647595-75647645	GM06990	blood:	n/a
46	chrX:75647595-75647645	SK-N-MC	brain:	n/a
47	chrX:75647595-75647645	BE2_C	brain:	n/a
48	chrX:75647595-75647645	MCF-7	breast:	n/a
49	chrX:75647595-75647645	HNPCEpiC	eye:	n/a
50	chrX:75647595-75647645	NT2-D1	testis:	n/a

No data

Variant related genes	Relation type
MAGEE1	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830377	chrX:75525310-76337197	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv498037	chrX:75586665-76291236	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75646800-75649800	Active TSS	Brain Anterior Caudate	brain
2	chrX:75647200-75647800	Enhancers	Dnd41	blood
3	chrX:75647200-75649000	Active TSS	Brain Hippocampus Middle	brain
4	chrX:75647200-75649400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chrX:75647200-75649400	Active TSS	Stomach Smooth Muscle	stomach
6	chrX:75647400-75647800	Enhancers	Primary B cells from cord blood	blood
7	chrX:75647400-75647800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chrX:75647400-75647800	Enhancers	HepG2	liver
9	chrX:75647400-75648000	Enhancers	Primary B cells from peripheral blood	blood
10	chrX:75647400-75648000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:75647400-75648000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chrX:75647400-75648000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chrX:75647400-75650000	Active TSS	Brain Angular Gyrus	brain
14	chrX:75647400-75650600	Active TSS	Brain Cingulate Gyrus	brain
15	chrX:75647600-75647800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chrX:75647600-75647800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chrX:75647600-75647800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:75647600-75647800	Enhancers	Adipose Nuclei	Adipose
19	chrX:75647600-75647800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chrX:75647600-75648000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:75647600-75648000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chrX:75647600-75648000	Enhancers	Primary T cells fromperipheralblood	blood
23	chrX:75647600-75648000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chrX:75647600-75648000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chrX:75647600-75648000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chrX:75647600-75648000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chrX:75647600-75648000	Enhancers	GM12878-XiMat	blood
28	chrX:75647600-75648000	Enhancers	Osteobl	bone
29	chrX:75647600-75648600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
30	chrX:75647600-75648600	Active TSS	Skeletal Muscle Male	skeletal muscle
31	chrX:75647600-75649000	Active TSS	Fetal Kidney	kidney
32	chrX:75647600-75649200	Active TSS	Brain Substantia Nigra	brain
33	chrX:75647600-75649200	Active TSS	Right Atrium	heart
34	chrX:75647600-75649200	Active TSS	A549	lung
35	chrX:75647600-75649400	Active TSS	Duodenum Smooth Muscle	Duodenum

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