Variant report

Variant	rs66488381
Chromosome Location	chr5:164948869-164948870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13189861	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62381888	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018838	chr5:164942118-165164396	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164948600-164949000	Enhancers	Colon Smooth Muscle	Colon
2	chr5:164948600-164949000	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:164948600-164949800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:164948800-164949000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:164948800-164949000	Flanking Active TSS	Fetal Lung	lung
6	chr5:164948800-164949400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr5:164948800-164949600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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