Variant report

Variant	rs66497557
Chromosome Location	chr6:37591124-37591125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37579109..37581882-chr6:37590162..37592483,2	MCF-7	breast:
2	chr6:37587258..37590079-chr6:37590589..37593405,2	K562	blood:
3	chr6:37590156..37593424-chr6:37597234..37601597,4	K562	blood:
4	chr6:37589204..37591463-chr6:37593402..37596526,3	K562	blood:
5	chr6:37590338..37593047-chr6:37604192..37605778,2	K562	blood:
6	chr6:37583299..37586472-chr6:37588985..37593847,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12663898	0.96[ASN][1000 genomes]
rs12665558	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12665609	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13199706	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13216911	0.96[ASN][1000 genomes]
rs13217481	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13217642	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1883898	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34207353	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34278717	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34952823	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35238957	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67395334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs804821	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs804822	0.81[ASN][1000 genomes]
rs9349049	0.96[ASN][1000 genomes]
rs9366942	0.96[ASN][1000 genomes]
rs9369014	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380694	0.96[ASN][1000 genomes]
rs9394443	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470648	0.89[ASN][1000 genomes]
rs9637970	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv602955	chr6:37581200-37599962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37586200-37592400	Weak transcription	Right Atrium	heart
2	chr6:37586600-37592400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:37586600-37593800	Enhancers	Primary B cells from cord blood	blood
4	chr6:37587000-37592600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:37587200-37592800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:37587400-37592000	Weak transcription	Fetal Brain Male	brain
7	chr6:37587600-37592400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:37587800-37591600	Weak transcription	NH-A	brain
9	chr6:37587800-37592400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:37588000-37592000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:37589200-37593200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:37589800-37591200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:37589800-37593000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:37590000-37591200	Enhancers	GM12878-XiMat	blood
15	chr6:37590000-37591400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:37590200-37591200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:37590200-37591200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:37590200-37591200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:37590400-37591200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:37590400-37592400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:37590600-37592400	Enhancers	NHEK	skin
22	chr6:37590600-37592600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr6:37590600-37592600	Enhancers	HMEC	breast
24	chr6:37590600-37592800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:37590600-37593400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:37590800-37591200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:37590800-37591600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:37590800-37592200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:37590800-37592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:37590800-37592400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37590800-37592400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:37590800-37592400	Enhancers	A549	lung
33	chr6:37591000-37592000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:37591000-37592000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:37591000-37592000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:37591000-37592000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:37591000-37592000	Weak transcription	Spleen	Spleen
38	chr6:37591000-37593400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:37591000-37593400	Enhancers	NHDF-Ad	bronchial

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