Variant report

Variant	rs66501886
Chromosome Location	chr3:67412449-67412450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1065401	0.81[ASN][1000 genomes]
rs11127600	0.82[ASN][1000 genomes]
rs11719132	0.81[ASN][1000 genomes]
rs12714460	0.80[ASN][1000 genomes]
rs1552631	0.86[ASN][1000 genomes]
rs1979639	0.81[ASN][1000 genomes]
rs3919986	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4615095	0.81[ASN][1000 genomes]
rs6786038	0.82[ASN][1000 genomes]
rs6788018	0.81[ASN][1000 genomes]
rs7615641	0.82[ASN][1000 genomes]
rs902321	0.82[ASN][1000 genomes]
rs9860059	0.82[ASN][1000 genomes]
rs9864384	0.82[ASN][1000 genomes]
rs9867496	0.80[ASN][1000 genomes]
rs9867659	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67403800-67412600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:67408800-67412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:67408800-67412800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:67411200-67415000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:67411200-67415000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:67411200-67415200	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:67411600-67414200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:67411800-67413200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:67412200-67413200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:67412200-67413400	Weak transcription	Primary T cells from cord blood	blood
11	chr3:67412400-67453000	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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