Variant report

Variant	rs66503643
Chromosome Location	chr2:76894749-76894750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11126550	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11126551	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12472972	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1519980	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67177729	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67302681	0.87[EUR][1000 genomes]
rs985343	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1006275	chr2:76885103-76929056	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76891400-76894800	Weak transcription	Fetal Brain Male	brain
2	chr2:76892600-76902400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:76894400-76895800	Enhancers	Fetal Heart	heart
4	chr2:76894600-76895000	Enhancers	Colon Smooth Muscle	Colon
5	chr2:76894600-76895400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:76894600-76898000	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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