Variant report

Variant	rs66505306
Chromosome Location	chr14:25078610-25078611
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12878578	0.83[EUR][1000 genomes]
rs12884659	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12896130	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273843	0.81[EUR][1000 genomes]
rs34604102	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35240563	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35328996	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35915454	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573880	0.87[EUR][1000 genomes]
rs7140465	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71405867	0.80[EUR][1000 genomes]
rs7153040	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156640	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161505	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679396	1.00[ASN][1000 genomes]
rs8010409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901502	chr14:25074711-25101706	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25074800-25079200	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr14:25076000-25079000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:25076200-25081600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:25077000-25078800	Enhancers	Fetal Intestine Small	intestine
5	chr14:25077200-25081200	Weak transcription	Spleen	Spleen
6	chr14:25077400-25079000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr14:25077400-25082200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:25078000-25078800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:25078200-25079800	Enhancers	GM12878-XiMat	blood
10	chr14:25078400-25092200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:25078600-25078800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:25078600-25079000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr14:25078600-25079000	Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr14:25078600-25081200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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