Variant report

Variant	rs66507557
Chromosome Location	chr13:48286169-48286170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1924787	0.81[AMR][1000 genomes]
rs1924788	0.83[AMR][1000 genomes]
rs1924789	0.83[AMR][1000 genomes]
rs1924790	0.83[AMR][1000 genomes]
rs1924808	0.82[AMR][1000 genomes]
rs2078156	0.80[AMR][1000 genomes]
rs2147495	0.82[AMR][1000 genomes]
rs2147496	0.82[AMR][1000 genomes]
rs2147497	0.82[AMR][1000 genomes]
rs2406597	0.82[AMR][1000 genomes]
rs34197720	0.81[AMR][1000 genomes]
rs34248686	0.83[AMR][1000 genomes]
rs35125163	0.81[AMR][1000 genomes]
rs35773785	0.81[AMR][1000 genomes]
rs4942671	0.82[AMR][1000 genomes]
rs4942672	0.83[AMR][1000 genomes]
rs4942675	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5006925	0.82[AMR][1000 genomes]
rs5006926	0.82[AMR][1000 genomes]
rs5006927	0.82[AMR][1000 genomes]
rs56403806	0.83[AMR][1000 genomes]
rs56787476	0.83[AMR][1000 genomes]
rs57463101	0.84[AMR][1000 genomes]
rs61973357	0.88[AFR][1000 genomes]
rs6561402	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6561403	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66703589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66707751	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67714643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67796821	0.83[AMR][1000 genomes]
rs68115109	0.83[AMR][1000 genomes]
rs72623335	0.83[AMR][1000 genomes]
rs72623336	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72623337	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7331824	0.94[ASN][1000 genomes]
rs7489854	0.83[AMR][1000 genomes]
rs9526381	0.83[AMR][1000 genomes]
rs9526382	0.81[AMR][1000 genomes]
rs9526383	0.83[AMR][1000 genomes]
rs9526384	0.83[AMR][1000 genomes]
rs9526385	0.83[AMR][1000 genomes]
rs9526386	0.83[AMR][1000 genomes]
rs9526387	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526388	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534754	0.83[AMR][1000 genomes]
rs9534755	0.83[AMR][1000 genomes]
rs9534756	0.82[AMR][1000 genomes]
rs9534757	0.82[AMR][1000 genomes]
rs9534759	0.83[AMR][1000 genomes]
rs9534760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534763	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562761	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900066	chr13:48234112-48292845	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1047818	chr13:48264618-48327155	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv1052701	chr13:48273757-48326134	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	esv3371516	chr13:48285051-48289349	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48283800-48287000	Weak transcription	Placenta	Placenta

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