Variant report

Variant	rs6651089
Chromosome Location	chr7:139549364-139549365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139548143..139550400-chr7:139575371..139578178,2	K562	blood:
2	chr7:139546069..139548088-chr7:139549009..139551513,2	MCF-7	breast:
3	chr7:139544662..139547554-chr7:139547944..139549525,2	K562	blood:
4	chr7:139548430..139551267-chr7:139551833..139553598,3	K562	blood:
5	chr7:139547853..139551182-chr7:139551927..139555361,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10239087	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs61286384	1.00[EUR][1000 genomes]
rs6969628	0.95[ASN][1000 genomes]
rs7796194	0.81[AFR][1000 genomes]
rs9886049	0.95[ASN][1000 genomes]
rs9886179	0.95[ASN][1000 genomes]
rs9886217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6651089	LZIC	trans	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139531400-139553800	Weak transcription	Primary T cells from cord blood	blood
2	chr7:139531400-139572600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:139541000-139555200	Weak transcription	Thymus	Thymus
4	chr7:139542400-139551600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:139542800-139551600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:139543000-139551800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:139543200-139554000	Weak transcription	Fetal Thymus	thymus
8	chr7:139543800-139549800	Weak transcription	Fetal Lung	lung
9	chr7:139545000-139551600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:139545200-139553000	Weak transcription	Lung	lung
11	chr7:139545200-139559800	Weak transcription	Spleen	Spleen
12	chr7:139545400-139551600	Weak transcription	Gastric	stomach
13	chr7:139546400-139551600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:139546800-139553200	Weak transcription	Pancreas	Pancrea
15	chr7:139548400-139550200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:139548600-139550200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:139548600-139550600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:139548800-139553200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:139549000-139551200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:139549200-139553400	Weak transcription	Primary hematopoietic stem cells	blood

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