Variant report

Variant	rs6651255
Chromosome Location	chr8:130723792-130723793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130719927..130722565-chr8:130723755..130726675,2	MCF-7	breast:
2	chr8:130707905..130710506-chr8:130721790..130724532,3	K562	blood:
3	chr8:130700888..130706431-chr8:130718980..130724092,7	K562	blood:
4	chr8:130717459..130720769-chr8:130721541..130726036,4	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10104593	0.86[ASN][1000 genomes]
rs1074286	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10808583	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956490	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11984666	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062078	0.94[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3886937	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3886938	0.94[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130415	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144736	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs4144738	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs4335095	0.86[ASN][1000 genomes]
rs4345520	0.86[ASN][1000 genomes]
rs4425724	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs4571702	0.86[ASN][1000 genomes]
rs4733724	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4733725	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4733726	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4733727	0.87[ASN][1000 genomes]
rs4733728	0.87[ASN][1000 genomes]
rs4733732	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs60228607	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470763	0.99[ASN][1000 genomes]
rs6470764	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470765	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6985118	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6986256	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7004355	0.86[ASN][1000 genomes]
rs7341636	0.87[ASN][1000 genomes]
rs7388479	0.84[ASN][1000 genomes]
rs7814941	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7815955	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7816131	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7816342	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816625	0.85[ASN][1000 genomes]
rs7826493	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7828785	0.85[ASN][1000 genomes]
rs7833174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7841981	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846627	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8387	chr8:130711059-130756654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130719200-130723800	Flanking Active TSS	A549	lung
2	chr8:130719800-130725600	Enhancers	K562	blood
3	chr8:130720200-130723800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:130720600-130724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:130720800-130725600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:130721000-130724600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130721600-130725400	Weak transcription	HSMMtube	muscle
8	chr8:130721600-130725600	Weak transcription	Fetal Stomach	stomach
9	chr8:130722000-130724000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:130722200-130724600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:130722400-130725000	Weak transcription	Fetal Lung	lung
12	chr8:130722600-130724000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:130722800-130724000	Enhancers	NH-A	brain
14	chr8:130723000-130724000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:130723200-130734600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:130723400-130725000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:130723400-130725000	Weak transcription	Placenta	Placenta
18	chr8:130723400-130725400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:130723400-130726800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:130723400-130740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:130723600-130725200	Weak transcription	NHDF-Ad	bronchial
22	chr8:130723600-130725600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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