Variant report

Variant	rs66550019
Chromosome Location	chr15:34104663-34104664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12898408	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12899100	1.00[AFR][1000 genomes]
rs12899636	0.98[EUR][1000 genomes]
rs12900245	0.98[EUR][1000 genomes]
rs12906601	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12911767	1.00[AFR][1000 genomes]
rs12914825	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34531207	1.00[AFR][1000 genomes]
rs34649393	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35293080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35740703	0.98[EUR][1000 genomes]
rs35876065	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35885784	0.98[EUR][1000 genomes]
rs55771153	0.94[EUR][1000 genomes]
rs56163067	1.00[AFR][1000 genomes]
rs67454797	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34061600-34121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:34071400-34107200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:34080800-34105000	Weak transcription	Aorta	Aorta
4	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:34091000-34108800	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:34091800-34151000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:34094600-34105800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:34095000-34105000	Weak transcription	Brain Anterior Caudate	brain
9	chr15:34095400-34118400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:34097800-34123800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:34099600-34109800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:34103000-34105000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:34103000-34105200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:34103200-34105000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:34103200-34105200	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:34103200-34105400	Weak transcription	Fetal Stomach	stomach
17	chr15:34103400-34105000	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:34103400-34105000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:34104000-34104800	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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