The 2.0 version of rSNPBase

Variant report

Variant rs6656182
Chromosome Location chr1:214512730-214512731
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
2 chr1:214484800-214522000 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:214485000-214513200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
5 chr1:214488200-214517600 Weak transcription Brain Germinal Matrix brain
6 chr1:214488200-214520800 Weak transcription Hela-S3 cervix
7 chr1:214490800-214518200 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:214493000-214519800 Weak transcription Brain Hippocampus Middle brain
9 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:214493800-214519000 Weak transcription Fetal Thymus thymus
11 chr1:214501800-214517800 Weak transcription Primary hematopoietic stem cells blood
12 chr1:214502600-214515000 Weak transcription Brain Angular Gyrus brain
13 chr1:214503200-214537800 Weak transcription Gastric stomach
14 chr1:214503400-214513000 Weak transcription K562 blood
15 chr1:214503400-214518400 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr1:214503800-214515800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:214504600-214517600 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:214506800-214513200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:214506800-214514600 Weak transcription A549 lung
21 chr1:214507000-214517400 Weak transcription HUVEC blood vessel
22 chr1:214507000-214529800 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:214508000-214517200 Weak transcription Fetal Lung lung
24 chr1:214508000-214517400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr1:214508000-214517400 Weak transcription NHLF lung
26 chr1:214508200-214514200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:214508400-214517200 Weak transcription Placenta Placenta
28 chr1:214508400-214517800 Weak transcription Primary B cells from peripheral blood blood
29 chr1:214508400-214520000 Weak transcription Thymus Thymus
30 chr1:214508400-214524600 Weak transcription Lung lung
31 chr1:214508400-214524800 Weak transcription Spleen Spleen
32 chr1:214508400-214529600 Weak transcription Pancreas Pancrea
33 chr1:214508400-214535000 Weak transcription Esophagus oesophagus
34 chr1:214508800-214513800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:214508800-214514000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:214508800-214517000 Weak transcription Fetal Muscle Trunk muscle
37 chr1:214508800-214520400 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:214508800-214528600 Weak transcription Fetal Intestine Large intestine
39 chr1:214509200-214523200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:214509400-214516600 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:214510200-214513800 Strong transcription Liver Liver
42 chr1:214510200-214514200 Strong transcription Primary T cells from cord blood blood
43 chr1:214510200-214514200 Weak transcription NHEK skin
44 chr1:214510400-214513000 Strong transcription HepG2 liver
45 chr1:214510600-214513200 Strong transcription Primary T helper cells PMA-I stimulated --
46 chr1:214510600-214513400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:214510600-214514000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr1:214510600-214514000 Genic enhancers HSMM muscle
49 chr1:214510800-214512800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:214510800-214512800 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015