Variant report

Variant	rs6656228
Chromosome Location	chr1:69995023-69995024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10889836	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12045969	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891221	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1935245	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2901318	0.82[ASN][1000 genomes]
rs2901319	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6424551	0.93[EUR][1000 genomes]
rs6424552	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7531225	0.86[EUR][1000 genomes]
rs7539998	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7540187	0.86[EUR][1000 genomes]
rs7542641	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs912774	0.86[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6656228	ZFYVE28	trans	parietal	SCAN
rs6656228	SLC35D1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69994800-69997800	Weak transcription	K562	blood
2	chr1:69995000-69998800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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