Variant report

Variant	rs6656261
Chromosome Location	chr1:151149601-151149602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151144218..151146582-chr1:151148058..151150409,2	K562	blood:
2	chr1:151002944..151005069-chr1:151149022..151151363,2	MCF-7	breast:
3	chr1:151137725..151143993-chr1:151144904..151151967,18	K562	blood:
4	chr1:151147180..151151121-chr1:151169846..151172495,3	MCF-7	breast:
5	chr1:151148514..151150724-chr1:151226205..151227908,2	MCF-7	breast:
6	chr1:151147344..151150005-chr1:151195785..151198506,2	MCF-7	breast:
7	chr1:151149446..151154137-chr1:151160339..151164004,6	K562	blood:

Variant related genes	Relation type
ENSG00000163159	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000163157	Chromatin interaction
ENSG00000163156	Chromatin interaction
ENSG00000159352	Chromatin interaction
ENSG00000163155	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6661347	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
5	nsv831559	chr1:151109459-151239921	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv831570	chr1:151129020-151281778	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151139600-151149800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:151139600-151158600	Strong transcription	Fetal Stomach	stomach
3	chr1:151139600-151158600	Strong transcription	Lung	lung
4	chr1:151139600-151161600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:151139800-151158600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:151139800-151158600	Strong transcription	Fetal Intestine Small	intestine
7	chr1:151139800-151159000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:151139800-151159400	Strong transcription	Fetal Brain Female	brain
9	chr1:151140000-151153400	Strong transcription	Placenta	Placenta
10	chr1:151140000-151158600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:151140000-151158600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:151140000-151158600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr1:151140000-151158600	Strong transcription	Fetal Intestine Large	intestine
14	chr1:151140000-151158600	Strong transcription	Fetal Thymus	thymus
15	chr1:151140000-151158600	Strong transcription	Spleen	Spleen
16	chr1:151140000-151158800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr1:151140000-151158800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:151140000-151159200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:151140000-151159200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr1:151140000-151160000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:151140000-151160800	Weak transcription	Stomach Mucosa	stomach
22	chr1:151140600-151158600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:151140600-151158600	Strong transcription	Thymus	Thymus
24	chr1:151140600-151159800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:151140800-151159000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr1:151144000-151153600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:151144000-151155000	Weak transcription	NHDF-Ad	bronchial
28	chr1:151145600-151158400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:151145600-151158600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:151145600-151158800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr1:151145800-151151400	Strong transcription	Primary B cells from cord blood	blood
32	chr1:151145800-151151600	Strong transcription	GM12878-XiMat	blood
33	chr1:151145800-151157000	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr1:151145800-151158400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:151145800-151158600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:151145800-151158600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr1:151145800-151158800	Strong transcription	Primary T cells from cord blood	blood
38	chr1:151145800-151158800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:151145800-151158800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:151145800-151159400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:151145800-151159600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:151145800-151160200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:151146000-151158600	Strong transcription	Liver	Liver
44	chr1:151146000-151158800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr1:151146000-151158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr1:151146000-151159000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:151146400-151158600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:151146400-151160400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:151146400-151160800	Weak transcription	Fetal Heart	heart
50	chr1:151146600-151151600	Strong transcription	NHEK	skin

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