Variant report

Variant	rs6656752
Chromosome Location	chr1:67122719-67122720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67111893..67113546-chr1:67120474..67122903,2	K562	blood:
2	chr1:67117841..67120415-chr1:67120949..67123925,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1014778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10889639	1.00[ASN][1000 genomes]
rs11208934	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208939	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031054	1.00[ASN][1000 genomes]
rs12128857	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760606	0.94[ASN][1000 genomes]
rs1359461	1.00[ASN][1000 genomes]
rs4143026	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778510	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6656461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6681164	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6681263	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7524680	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9659684	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660797	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9662956	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6656752	TCTEX1D1	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
2	chr1:67091200-67128000	Weak transcription	NH-A	brain
3	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
4	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:67108000-67136200	Weak transcription	Fetal Brain Female	brain
6	chr1:67109200-67141800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:67109600-67134200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:67109600-67155000	Weak transcription	Brain Anterior Caudate	brain
9	chr1:67110800-67134400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:67111000-67135200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:67111400-67154800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:67114200-67134200	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:67114200-67142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:67114200-67156400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:67114600-67142200	Weak transcription	NHLF	lung
16	chr1:67118600-67123200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:67118800-67138800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:67118800-67140400	Weak transcription	Aorta	Aorta
19	chr1:67121200-67145400	Weak transcription	Brain Angular Gyrus	brain
20	chr1:67122000-67130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:67122000-67141200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:67122400-67132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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