Variant report

Variant	rs6658151
Chromosome Location	chr1:85926281-85926282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12568675	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2935	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55639236	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56154783	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56216312	0.84[EUR][1000 genomes]
rs67644506	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7540169	0.93[EUR][1000 genomes]
rs7547650	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs975880	0.86[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85915200-85927800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:85917400-85926400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:85917400-85929400	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:85917400-85929400	Weak transcription	Gastric	stomach
5	chr1:85917400-85929800	Weak transcription	Esophagus	oesophagus
6	chr1:85917800-85927200	Weak transcription	NH-A	brain
7	chr1:85917800-85928800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:85919200-85928400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:85919400-85927200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:85919600-85928200	Weak transcription	Fetal Brain Female	brain
11	chr1:85920000-85929600	Weak transcription	Brain Substantia Nigra	brain
12	chr1:85920200-85926400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:85920200-85928000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:85920400-85926400	Weak transcription	NHLF	lung
15	chr1:85920800-85929000	Weak transcription	HSMMtube	muscle
16	chr1:85922600-85928400	Enhancers	Fetal Intestine Large	intestine
17	chr1:85922600-85929000	Enhancers	Fetal Intestine Small	intestine
18	chr1:85923200-85927000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:85923200-85929800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:85923600-85927000	Enhancers	HepG2	liver
21	chr1:85923600-85928200	Enhancers	Liver	Liver
22	chr1:85924200-85926800	Enhancers	Colon Smooth Muscle	Colon
23	chr1:85924400-85927800	Weak transcription	Pancreas	Pancrea
24	chr1:85924600-85927800	Enhancers	HUVEC	blood vessel
25	chr1:85924800-85927200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:85924800-85928400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:85925000-85927000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:85925000-85928600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:85925000-85928800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:85925000-85929200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr1:85925200-85927200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:85925200-85929400	Weak transcription	Aorta	Aorta
33	chr1:85925400-85927000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:85925400-85927000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:85925400-85927200	Enhancers	NHDF-Ad	bronchial
36	chr1:85925400-85928000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:85925400-85928200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:85925400-85929000	Weak transcription	Fetal Stomach	stomach
39	chr1:85925400-85929200	Weak transcription	Adipose Nuclei	Adipose
40	chr1:85925600-85926400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr1:85925600-85928000	Weak transcription	Fetal Brain Male	brain
42	chr1:85925800-85926400	Weak transcription	Ovary	ovary
43	chr1:85925800-85927200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:85925800-85928200	Weak transcription	Brain Germinal Matrix	brain
45	chr1:85925800-85929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:85926000-85926400	Active TSS	Duodenum Mucosa	Duodenum
47	chr1:85926000-85926800	Enhancers	A549	lung
48	chr1:85926000-85927000	Weak transcription	Fetal Lung	lung
49	chr1:85926000-85928000	Enhancers	Fetal Kidney	kidney
50	chr1:85926000-85928400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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