Variant report

Variant	rs6658209
Chromosome Location	chr1:114480818-114480819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114300984..114302990-chr1:114478955..114481737,2	MCF-7	breast:
2	chr1:114480724..114483569-chr1:114488715..114491848,4	K562	blood:
3	chr1:114445714..114449676-chr1:114478836..114482443,5	K562	blood:
4	chr1:114479386..114481904-chr1:114482681..114484315,2	K562	blood:
5	chr1:114480724..114484665-chr1:114488445..114490479,3	K562	blood:
6	chr1:114479071..114481110-chr1:114495976..114498607,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163349	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000134262	Chromatin interaction
ENSG00000118655	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000528	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217441	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2147079	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2476598	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3811018	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4381184	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6702833	0.86[EUR][1000 genomes]
rs7522987	0.88[EUR][1000 genomes]
rs7545038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551215	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7554371	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6658209	OLFML3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114473200-114481200	Weak transcription	Spleen	Spleen
2	chr1:114473400-114483000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:114473400-114483200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:114473600-114483000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:114473600-114483000	Weak transcription	Placenta	Placenta
6	chr1:114473600-114483200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:114473600-114499200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:114473800-114483000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:114473800-114483000	Weak transcription	Colonic Mucosa	Colon
10	chr1:114473800-114483200	Weak transcription	Right Ventricle	heart
11	chr1:114474200-114482600	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:114474200-114483000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:114474200-114483000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:114474200-114483200	Weak transcription	Aorta	Aorta
15	chr1:114474200-114483400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:114474200-114489600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:114474400-114483200	Weak transcription	Fetal Brain Female	brain
18	chr1:114474600-114483200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:114474600-114483200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr1:114474800-114482600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:114474800-114482800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:114474800-114483000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:114474800-114483000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:114474800-114483000	Weak transcription	Fetal Intestine Large	intestine
25	chr1:114474800-114483400	Weak transcription	HMEC	breast
26	chr1:114474800-114483400	Weak transcription	HSMMtube	muscle
27	chr1:114474800-114483800	Weak transcription	Fetal Kidney	kidney
28	chr1:114474800-114483800	Weak transcription	NHDF-Ad	bronchial
29	chr1:114474800-114488600	Weak transcription	Stomach Mucosa	stomach
30	chr1:114475000-114481800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:114475000-114483000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr1:114475000-114483000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:114475000-114483000	Weak transcription	Brain Germinal Matrix	brain
34	chr1:114475000-114483200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:114475000-114483200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:114475000-114483400	Weak transcription	NH-A	brain
37	chr1:114475200-114482200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:114475200-114482800	Weak transcription	Osteobl	bone
39	chr1:114475200-114483000	Weak transcription	Fetal Intestine Small	intestine
40	chr1:114475200-114483200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:114475200-114483200	Weak transcription	HSMM	muscle
42	chr1:114475400-114485600	Weak transcription	Fetal Brain Male	brain
43	chr1:114475400-114485600	Weak transcription	A549	lung
44	chr1:114475600-114483000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr1:114475600-114483200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:114475800-114481800	Weak transcription	Hela-S3	cervix
47	chr1:114475800-114483000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:114476000-114482600	Weak transcription	Brain Substantia Nigra	brain
49	chr1:114476000-114483000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr1:114476000-114483200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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