Variant report

Variant	rs66587713
Chromosome Location	chr3:111657902-111657903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111657803-111659354	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:111657732-111657914	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111651028..111653319-chr3:111657022..111659606,2	MCF-7	breast:

Variant related genes	Relation type
PHLDB2	TF binding region
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13061340	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137897	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2272289	0.81[AFR][1000 genomes]
rs34614600	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36002857	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71315891	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73230448	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
8	chr3:111641800-111658200	Weak transcription	Ovary	ovary
9	chr3:111642200-111674400	Weak transcription	Lung	lung
10	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
11	chr3:111643400-111658200	Weak transcription	HepG2	liver
12	chr3:111643400-111660000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:111643600-111658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:111645000-111658600	Weak transcription	Fetal Heart	heart
15	chr3:111645200-111663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:111645400-111665400	Weak transcription	Right Atrium	heart
17	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:111645800-111658400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:111645800-111658400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:111648600-111658000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:111648600-111659600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
24	chr3:111650200-111670000	Strong transcription	Liver	Liver
25	chr3:111651000-111658000	Weak transcription	Right Ventricle	heart
26	chr3:111651000-111660000	Weak transcription	Pancreas	Pancrea
27	chr3:111651200-111660000	Weak transcription	Aorta	Aorta
28	chr3:111651800-111658000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:111652000-111658000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:111652200-111658000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:111652200-111658000	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:111652200-111665600	Weak transcription	Small Intestine	intestine
33	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:111653200-111658400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:111653600-111658200	Weak transcription	Fetal Intestine Large	intestine
37	chr3:111653600-111664000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
39	chr3:111654800-111658000	Weak transcription	Adipose Nuclei	Adipose
40	chr3:111654800-111667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:111655000-111658000	Weak transcription	Left Ventricle	heart
42	chr3:111655000-111658400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:111655400-111658200	Weak transcription	Fetal Lung	lung
44	chr3:111655600-111658200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:111655600-111660000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:111655600-111662400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:111655800-111658000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:111655800-111658000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:111656200-111658800	Strong transcription	Fetal Kidney	kidney
50	chr3:111656400-111658000	Weak transcription	HSMMtube	muscle

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