Variant report

Variant	rs66588543
Chromosome Location	chr7:149403968-149403969
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:149194206..149195719-chr7:149403582..149405506,2	K562	blood:
2	chr7:149400143..149403712-chr7:149403892..149407385,5	K562	blood:
3	chr7:149401690..149403763-chr7:149403906..149406534,2	MCF-7	breast:
4	chr7:149403487..149405237-chr7:149410267..149411952,2	K562	blood:
5	chr7:149403401..149406008-chr7:149406550..149409002,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181220	Chromatin interaction
ENSG00000133619	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10231875	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10240931	0.98[EUR][1000 genomes]
rs10256826	0.94[EUR][1000 genomes]
rs10256935	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10258658	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10262457	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10952835	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11979707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670882	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670973	0.83[AFR][1000 genomes]
rs1439098	0.81[AFR][1000 genomes]
rs1595613	0.87[AFR][1000 genomes]
rs17171280	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28647767	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55727837	0.93[EUR][1000 genomes]
rs56226490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56265968	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60047316	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60647533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67491931	0.99[EUR][1000 genomes]
rs67647638	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67657627	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68129719	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68139633	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73479712	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791608	0.95[EUR][1000 genomes]
rs7804205	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7808442	0.95[EUR][1000 genomes]
rs867152	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885651	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs885652	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885653	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149401400-149404000	Weak transcription	K562	blood
2	chr7:149402200-149404000	Weak transcription	Placenta	Placenta
3	chr7:149402600-149404800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:149402800-149404800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:149403000-149404000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:149403600-149404000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr7:149403600-149404200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr7:149403800-149404000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:149403800-149404000	Flanking Active TSS	HepG2	liver
10	chr7:149403800-149404200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links