Variant report
| Variant | rs6660070 |
|---|---|
| Chromosome Location | chr1:176277292-176277293 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr1:176277190-176277390 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231020 | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs12068738 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs12084102 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs12093427 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs12567704 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7532425 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7545685 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7552857 | 0.82[JPT][hapmap] |
| rs7553073 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1823794 | chr1:175869554-176311778 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
