Variant report

Variant	rs66602495
Chromosome Location	chr15:41462263-41462264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10152855	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070321	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11855102	0.85[ASN][1000 genomes]
rs11858678	0.96[ASN][1000 genomes]
rs12324159	0.98[ASN][1000 genomes]
rs1659227	0.92[ASN][1000 genomes]
rs16971693	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16971700	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1717198	0.93[ASN][1000 genomes]
rs1866400	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1971131	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2578655	0.95[ASN][1000 genomes]
rs28493237	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28495204	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899013	0.93[ASN][1000 genomes]
rs2928141	0.96[ASN][1000 genomes]
rs41442144	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4258585	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs537244	0.96[ASN][1000 genomes]
rs551482	0.95[ASN][1000 genomes]
rs55756301	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56082289	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56837771	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57943533	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58083671	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58644012	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59389433	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59616518	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59691280	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60249025	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60422198	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61495227	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61586152	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6492988	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6492991	0.87[ASN][1000 genomes]
rs6492992	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66471237	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66510055	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67531333	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68133575	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs690733	0.95[ASN][1000 genomes]
rs691702	0.95[ASN][1000 genomes]
rs692335	0.82[ASN][1000 genomes]
rs7165931	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7166205	0.84[ASN][1000 genomes]
rs7166905	0.82[ASN][1000 genomes]
rs7170049	0.93[ASN][1000 genomes]
rs7170913	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7173086	0.85[ASN][1000 genomes]
rs7178840	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179231	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179676	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179969	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72737765	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396336	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73396340	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8023638	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8026858	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029792	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8032589	0.80[ASN][1000 genomes]
rs8035252	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8037302	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038834	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8039915	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8039934	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs909023	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs909024	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs909025	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9972345	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972349	0.93[ASN][1000 genomes]
rs9972622	0.93[ASN][1000 genomes]
rs9972623	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41459800-41463000	Enhancers	Fetal Brain Male	brain
2	chr15:41460400-41462600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:41461200-41462400	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:41461200-41462400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:41461200-41462400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:41461200-41462600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr15:41461400-41462400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:41461600-41462400	Enhancers	Fetal Brain Female	brain
9	chr15:41462000-41462400	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:41462000-41462400	Enhancers	K562	blood

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