Variant report

Variant	rs666026
Chromosome Location	chr8:102557218-102557219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102540601..102548196-chr8:102552198..102557907,8	MCF-7	breast:
2	chr8:102557068..102559432-chr8:102644756..102646494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253991	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs510426	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102550800-102558800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:102551400-102577400	Weak transcription	Fetal Stomach	stomach
3	chr8:102552200-102558600	Weak transcription	Lung	lung
4	chr8:102552200-102564200	Weak transcription	Esophagus	oesophagus
5	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:102553000-102563000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:102553000-102573600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:102554000-102564600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:102554200-102569000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:102554200-102570600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:102554400-102570400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:102554800-102562600	Strong transcription	NHEK	skin
13	chr8:102555000-102557600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:102555000-102557800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:102555000-102560800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:102555200-102557800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:102555400-102557400	Strong transcription	Placenta	Placenta
18	chr8:102555400-102557600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:102555400-102557600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:102555600-102557600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:102555800-102561800	Weak transcription	Gastric	stomach
22	chr8:102555800-102565000	Weak transcription	Pancreas	Pancrea
23	chr8:102556200-102561600	Weak transcription	Fetal Intestine Small	intestine
24	chr8:102556400-102558600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:102556600-102567000	Weak transcription	HMEC	breast
26	chr8:102556800-102557400	Strong transcription	Fetal Intestine Large	intestine
27	chr8:102556800-102557400	Enhancers	Stomach Mucosa	stomach
28	chr8:102556800-102557400	Enhancers	A549	lung
29	chr8:102556800-102557600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr8:102557000-102557400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr8:102557000-102557400	Enhancers	HUVEC	blood vessel
32	chr8:102557000-102557600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr8:102557000-102557600	Enhancers	Aorta	Aorta
34	chr8:102557000-102557600	Enhancers	Small Intestine	intestine
35	chr8:102557200-102564400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:102557200-102564600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:102557200-102564600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr8:102557200-102570600	Weak transcription	Rectal Mucosa Donor 31	rectum

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