Variant report

Variant	rs66605734
Chromosome Location	chr5:5315351-5315352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:5314409..5317868-chr5:5331768..5333850,3	MCF-7	breast:
2	chr5:5311464..5313374-chr5:5314476..5316464,2	K562	blood:
3	chr5:5311464..5314031-chr5:5314476..5317424,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13157166	1.00[AFR][1000 genomes]
rs13169765	0.85[EUR][1000 genomes]
rs13170263	1.00[AFR][1000 genomes]
rs16875304	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34036802	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34190926	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34749956	1.00[AFR][1000 genomes]
rs35614306	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67273745	1.00[AFR][1000 genomes]
rs71596750	1.00[AFR][1000 genomes]
rs71596753	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5305600-5319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5305600-5326200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:5305800-5321400	Weak transcription	Fetal Kidney	kidney
4	chr5:5307800-5318000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:5308200-5318000	Weak transcription	Fetal Brain Male	brain
6	chr5:5311400-5324800	Weak transcription	Ovary	ovary
7	chr5:5312200-5320000	Enhancers	Fetal Muscle Leg	muscle
8	chr5:5312800-5317200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:5313400-5318200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:5313600-5315600	Weak transcription	Fetal Lung	lung
11	chr5:5313800-5315600	Weak transcription	Osteobl	bone
12	chr5:5313800-5316200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:5313800-5317400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:5313800-5319400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:5314000-5316200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:5314000-5318000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:5314400-5315600	Weak transcription	Psoas Muscle	Psoas
18	chr5:5314400-5315600	Weak transcription	HSMMtube	muscle
19	chr5:5314400-5315600	Weak transcription	NH-A	brain
20	chr5:5314400-5315800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:5314400-5316400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr5:5314400-5318600	Weak transcription	Pancreas	Pancrea
23	chr5:5314400-5319000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr5:5314400-5326200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:5315000-5315600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:5315200-5325800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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