Variant report

Variant	rs6660870
Chromosome Location	chr1:197775960-197775961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11801947	1.00[AFR][1000 genomes]
rs11808397	0.95[AFR][1000 genomes]
rs6658666	0.88[AFR][1000 genomes]
rs6673818	0.88[AFR][1000 genomes]
rs6690123	1.00[AFR][1000 genomes]
rs6693938	1.00[AFR][1000 genomes]
rs7545519	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3338319	chr1:197773129-197777427	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197771200-197777000	Weak transcription	Gastric	stomach
2	chr1:197771200-197777800	Weak transcription	HepG2	liver
3	chr1:197771600-197780600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:197771600-197784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:197771800-197776400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:197772000-197777000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:197772000-197778000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:197772200-197776400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:197775400-197776000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:197775800-197777400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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