Variant report
| Variant | rs6660995 |
|---|---|
| Chromosome Location | chr1:160864626-160864627 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:160864586-160864966 | GM12892 | blood: | n/a | n/a |
| 2 | TAF1 | chr1:160864622-160864840 | Hela-S3 | cervix: | n/a | n/a |
| 3 | POLR2A | chr1:160864624-160864851 | A549 | lung: | n/a | n/a |
| 4 | POLR2A | chr1:160864525-160864902 | Hela-S3 | cervix: | n/a | n/a |
| 5 | POLR2A | chr1:160864601-160864818 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213080 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs73021993 | 0.81[AFR][1000 genomes] |
| rs73022000 | 0.81[AFR][1000 genomes] |
| rs73025704 | 0.81[AFR][1000 genomes] |
| rs73027819 | 1.00[AFR][1000 genomes] |
| rs73027836 | 1.00[AFR][1000 genomes] |
| rs73027844 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530077 | chr1:160836448-161284904 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | esv3430322 | chr1:160851829-160920480 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
